.. _sphx_glr_examples_gallery_sequence_sequencing:

Sequence read quality control and mapping
-----------------------------------------


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how Biotite&#x27;s alignment functionalities can be used to map reads from...">

.. only:: html

  .. image:: /examples/gallery/sequence/sequencing/images/thumb/sphx_glr_gene_counts_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_sequencing_gene_counts.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Quantifying gene expression from RNA-seq data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In the following script we will perform a comparative genome assembly of the emerging SARS-CoV-...">

.. only:: html

  .. image:: /examples/gallery/sequence/sequencing/images/thumb/sphx_glr_genome_assembly_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_sequencing_genome_assembly.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparative genome assembly</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script performs quality control on sequence reads similar to the FastQC software. This exa...">

.. only:: html

  .. image:: /examples/gallery/sequence/sequencing/images/thumb/sphx_glr_quality_control_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_sequencing_quality_control.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Quality control of sequencing data</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script plots the sequencing quality scores from an FASTQ file along with the sequence (bas...">

.. only:: html

  .. image:: /examples/gallery/sequence/sequencing/images/thumb/sphx_glr_read_quality_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_sequencing_read_quality.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Quality of sequence reads</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/sequence/sequencing/gene_counts
   /examples/gallery/sequence/sequencing/genome_assembly
   /examples/gallery/sequence/sequencing/quality_control
   /examples/gallery/sequence/sequencing/read_quality