.. _sphx_glr_examples_gallery_sequence_misc:

Miscellaneous
-------------


.. raw:: html

    <div class="sphx-glr-thumbnails">


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example a dendrogram is created, that displays the similarity of amino acids in the BLO...">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_blosum_dendrogram_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_blosum_dendrogram.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Dendrogram of a substitution matrix</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script creates a table for codon usage in the Escherichia coli K-12 strain. Codon usage de...">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_codon_usage_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_codon_usage.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Calculation of codon usage</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script displays the available color schemes.">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_color_schemes_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_color_schemes.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Biotite color schemes</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script shows the same multiple protein sequence alignment in the different color schemes a...">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_color_schemes_protein_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_color_schemes_protein.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Biotite color schemes for protein sequences</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example shows how to evaluate the significance of a local alignment of two sequences. The ...">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_local_alignment_statistics_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_local_alignment_statistics.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Statistics of local alignments and the E-value</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example script searches for potential open reading frames (ORFs) in the Porcine circovirus...">

.. only:: html

  .. image:: /examples/gallery/sequence/misc/images/thumb/sphx_glr_orf_identification_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_sequence_misc_orf_identification.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Identification of potential open reading frames</div>
    </div>


.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/sequence/misc/blosum_dendrogram
   /examples/gallery/sequence/misc/codon_usage
   /examples/gallery/sequence/misc/color_schemes
   /examples/gallery/sequence/misc/color_schemes_protein
   /examples/gallery/sequence/misc/local_alignment_statistics
   /examples/gallery/sequence/misc/orf_identification